Folded k-spectrum kernel: https://github.com/elmasee/folks (Reference: Elmas A, Wang X, Dresch JM (2017) The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies. PLoS ONE 12(10): e0185570.) Thermodynamic-based Model: https://github.com/arnosti-lab (Reference: *Sayal R, *Dresch JM, Pushel I, Taylor BR, … Continue reading Software